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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015889192.1_cds_XP_016443888.1_39007
CDS Infomation

[gene=LOC107769201] [db_xref=GeneID:107769201] [protein=5-epi-aristolochene synthase-like isoform X1] [protein_id=XP_016443888.1] [location=complement(join(49214..49510,49625..49870,50023..50161,50301..50519,50596..50971,51075..51333,51421..51531))] [gbkey=CDS]
Sequence

ATGGCCGCAGCAGCAGTTGGCAACTATGAAGAAGAGATTGTTCGCCCCGTCGCCGACTTC
TCCCCTAGTCTCTGGGGTGATCAGTTCCTTTCATTCTCCATTAAAAATCAGGTTGCAGAA
AAGTATGCTAAAGAGATTGAAGCATTGAAGGAACAAACGAGGAATATGCTGTTAGCAACT
GGAATGAAATTGGCTGATACACTGAATTTGATTGACATTATTGAACGTCTTGGCATCTCC
TACCACTTTGAAAAAGAAATTGATGAGATTTTGGATCAAATTTATAACCAAAACTCAAAC
TGCGACGATTTGTGCATTTCTGCACTTCAATTTCGATTGCTCAGGCAACATGGTTTCAAC
ATCTCTCCTGAAATTTTCAGCAAATTCCAAGATGAAAATGGCAAATTCAAGGAGTCTCTT
GCTAGTGATGTCTTAGGATTATTGAACTTGTATGAAGCTTCACATGTAAGGACTCATGCT
GACGATATCTTAGAAGACGCACTTGCTTTCTCCACTATCCATCTTGAATCTGCAGCTCCA
CATTTGAAATCTCCACTTAAGGAGCAAGTGACACATGCCCTTGAGCAATGTTTGCACAAG
GGTGTTCCTAGAGTCGAGACCCGATTCTTCATCTCATCAATCTATGACAAGGAACAATCG
AAGAATAATGTGTTACTTCGATTTGCCAAATTGGATTTCAACTTGCTCCAGATGTTGCAC
AAACAAGAACTTGCTCAAGTATCAAGGTGGTGGAAAGATTTGGATTTCGTAACAACACTA
CCATATGCTAGAGATCGAGTAGTTGAATGTTACTTTTGGGCATTAGGAGTTTATTTTGAG
CCTCAATACTCTCAAGCACGTGTCATGCTCGTTAAGACAATATCGATGATTTCGATTGTC
GATGACACCTTTGATGCTTACGGTACAGTTAAAGAACTTGAGGCATTCACAGATGCCATA
CAAAGATGGGATATCAACGAAATTGATCGGCTTCCTGATTACATGAAAATCAGTTATAAA
GCTATTCTAGATCTTTACAAAGATTATGAAAAGGAATTGTCTAGTGCTGGAAGATCTCAT
ATTGTCTGCCATGCAATAGAAAGAATGAAAGAAGTAGTAAGAAATTATAATGTCGAGTCA
ACATGGTTTATTGAAGGATATATGCCACCTGTTTCTGAATACCTAAGCAATGCACTAGCA
ACTACTACATATTACTACCTTGCGACAACATCGTATTTGGGCATGAAGTCTGTTACGGAG
CAAGATTTTGAGTGGTTGTCAAAGAATCCTAAAATTCTTGAAGCTAGTGTGATAATATGC
CGAGTTATTGATGACACAGCCACATACGAAGTTGAGAAAAGTAGGGGACAAATTGCAACA
GGCATTGAGTGCTGCATGAGAGATTATGGCATAACAACAAAAGAGGCAATGACTAAATTT
CAAGAAATGGCTGAGGCAGCATGGAAGGATCTTAATGAAGGACTTCTTAGGCCCACTCCT
GTCGCTACGGAATTTTTATCTCGTATTCTCAATCTTGCCCGTATTGTTGAGGTTACTTAT
ATACACAATCTAGATGGATACACTCATCCGGAGAAAGTCTTGAAACCTCACATCAATGCC
CTACTTGTGGACTCCATCGAAATTTGA

Peptide Sequence

PEP ID

XP_016443888.1
PEP Infomation

PREDICTED: 5-epi-aristolochene synthase-like isoform X1 [Nicotiana tabacum]
Sequence

MAAAAVGNYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLAT
GMKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCDDLCISALQFRLLRQHGFN
ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP
HLKSPLKEQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH
KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV
DDTFDAYGTVKELEAFTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH
IVCHAIERMKEVVRNYNVESTWFIEGYMPPVSEYLSNALATTTYYYLATTSYLGMKSVTE
QDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGITTKEAMTKF
QEMAEAAWKDLNEGLLRPTPVATEFLSRILNLARIVEVTYIHNLDGYTHPEKVLKPHINA
LLVDSIEI

Transcript Sequence

Gene sequence data has not been registered.